The ppRNome Genome Browser displays experimental data introduced in the paper :

Whole-genome mapping of 5' ends in bacteria by tagged sequencing: A comprehensive view in Enterococcus faecalis
N. Innocenti, M. Golumbeanu, A. Fouquier d'Hérouël, C. Lacoux, R. A. Bonnin, S. P. Kennedy, F. Wessner, P. Serror, P. Bouloc, F. Repoila and E. Aurell [RNA, 2015]
Bioproject PRJNA272574

Browser Select Tracks Snapshots Custom Tracks Preferences
- Search
Landmark or Region:
Examples: EF_1980, id:6754, EF_23S, AE016830:250246..253154.
Data Source

Navigation: Select the region you want to see on the 'Overview' track. Drag the window on the 'Region' track to pan the view. The ruler on the 'Details' track can be clicked on and is useful to compare data on many tracks. Clicking on 'Genes' or 'CDS' opens a new window/tab with annotated function and sequence.

Display: Choose the data you want to visualize in the 'Select Tracks' menu above, where brief track descriptions are available. You can also upload your own annotations in the 'Custom Tracks' menu. Adapt the display to your screen in the 'Preferences'. To customize a specific track, click on the tool button . Tracks can be dragged up and down.

The following 4 regions match your request.


Name Type Description Position Match Score
EF_1980 start_codon AE016830:1917935..1917937 n/a
EF_1980 CDS AE016830:1917935..1918264 n/a
EF_1980 gene AE016830:1917935..1918267 n/a
EF_1980 stop_codon AE016830:1918265..1918267 n/a

Generic Genome Browser version 2.55 hosted by I2BC (2015).